2.1 Arise, Serpentor, Arise! - Part I
	Written by Buzz Dixon Production Number: 600-73 Airdate: September 15, 1986 Notes
2.2 Arise, Serpentor, Arise! - Part II
	Written by Buzz Dixon Production Number: 600-74 Airdate: September 16, 1986 Notes
2.3 Arise, Serpentor, Arise! - Part III
	Written by Buzz Dixon Production Number: 600-75 Airdate: September 17, 1986 Notes
2.4 Arise, Serpentor, Arise! - Part IV
	Written by Buzz Dixon Production Number: 600-76 Airdate: September 18, 1986 Notes
2.5 Arise, Serpentor, Arise! - Part V
	Written by Buzz Dixon Production Number: 600-77 Airdate: September 19, 1986 Notes

2.6 Last Hour to Doomsday
	Written by Tom Dagenais Production Number: 600-50 Airdate: September 25, 1986 Notes
2.7 Computer Complications
	Written by David Schwartz Production Number: 600-53 Airdate: September 26, 1986 Notes
2.8 Sink the Montana
	Written by David Carren Production Number: 600-54 Airdate: September 29, 1986 Notes
2.9 Let's Play Soldier
	Written by Sharman Di Vono Production Number: 600-60 Airdate: September 30, 1986 Notes
2.10 Once Upon a Joe
	Written by Buzz Dixon Production Number: 600-64 Airdate: October 1, 1986 Notes
2.11 The Million Dollar Medic
	Written by Carla and Gerry Conway Production Number: 600-62 Airdate: October 2, 1986 Notes
2.12 Cobrathon
	Written by Martin Pasko and Rebecca Parr Production Number: 600-61 Airdate: October 6, 1986 Notes
2.13 The Rotten Egg
	Written by Steve Mitchell and Barbara Petty Production Number: 600-63 Airdate: October 7, 1986 Notes
2.14 Glamour Girls
	Written by Beth Bornstein Production Number: 600-65 Airdate: October 8, 1986 Notes
2.15 Iceberg Goes South
	Written by Mary Skrenes Production Number: 600-66 Airdate: October 9, 1986 Notes
2.16 The Spy Who Rooked Me
	Written by Susan K. Williams Production Number: 600-67 Airdate: October 13, 1986 Notes
2.17 Grey Hairs and Growing Pains
	Written by Dave Marconi and Flint Dille Production Number: 600-68 Airdate: October 14, 1986 Notes
2.18 My Brother's Keeper
	Written by Buzz Dixon Production Number: 600-69 Airdate: October 15, 1986 Notes
2.19 My Favorite Things
	Written by Doug Booth Production Number: 600-70 Airdate: October 16, 1986 Notes
2.20 Raise the Flagg!
	Written by David Carren Production Number: 600-71 Airdate: October 20, 1986 Notes
2.21 Ninja Holiday
	Written by Michael Charles Hill Production Number: 600-79 Airdate: October 22, 1986 Notes
2.22 G.I.Joe and the Golden Fleece
	Story by Flint Dille and script by Rick Merwin Production Number: 600-72 Airdate: October 27, 1986 Notes
2.23 The Most Dangerous Thing in the World
	Written by Buzz Dixon Production Number: 600-78 Airdate: October 29, 1986 Notes
2.24 Nightmare Assault
	Written by Marv Wolfman Production Number: 600-80 Airdate: October 30, 1986 Notes
2.25 Second Hand Emotions
	Written by Carla and Gerry Conway Production Number: 600-82 Airdate: October 31, 1986 Notes
2.26 Joe's Night Out
	Written by David Schwartz Production Number: 600-81 Airdate: November 10, 1986 Notes
2.27 Not a Ghost of a Chance
	Written by Sharman Di Vono Production Number: 600-83 Airdate: November 13, 1986 Notes
2.28 Sins of Our Fathers
	Story by Steve Gerber and script by Buzz Dixon Production Number: 600-84 Airdate: November 18, 1986 Notes
2.29 In the Presence of Mine Enemies
	Written by Chris Weber and Karen Willson Production Number: 600-85 Airdate: November 19, 1986 Notes
2.30 Into Your Tent I Will Silently Creep
	Written by Buzz Dixon and Michael Charles Hill Production Number: 600-86 Airdate: November 20, 1986 Notes