Admiral Ledger tells Flint that they can travel to the Sea of Lost Souls, a thousand year-old graveyard for ships, in two hours, but Flint finds the amount of time unacceptable because Cobra could plant the cube and leave by the time the air craft carrier arrives. As Flint leads a team of Joes to attack Destro and the Baroness, Xamot and a few Crimson Guards climb along the side of the Joes' carrier and sneak into the detention area.

Lady Jaye leaps from Flint's Dragonfly and dives into the sea after the Joes engage Cobra's forces. "Don't worry," she tells Flint as she plunges into the water and in the middle of a battle. "I've been in worse dives." Destro spots Lady Jaye on a mirror built into the cube and tosses a robotipuss toward her, but Lady Jaye uses a ring to shoot a laser into the robot's eye to deactivate it. After the robotipuss retracts its arms and closes its eye, Lady Jaye tosses the deadly toy toward Destro and snares him in his own creation.

Tomax is rescued by Xamot thanks to some Starflies that explode and release a sleeping gas that puts his brother's prison guards to sleep.

Lady Jaye tosses a harpoon toward Destro, who manages to maneuver into the harpoon's path so that it strikes the robotipuss. The cube is activated and Cobra Commander shouts with glee because his plan is a success. Electrical devices all over the world die including Flint's Dragonfly. Flint leaps from the helicopter and use a Falcon glider to escape the falling Dragonfly. "Don't forget about me," Lady Jaye cries while hanging on the rungs of the helicopter. "I couldn't if I tried," Flint shouts before he catches Lady Jaye.

Tomax and Xamot escape with the aide of rafts pulled by sharks while Destro and the Baroness ride away on a boat powered by the backs and oars of Cobra soldiers. Tomax and Xamot send a flare into the sky and the Dreadnoks take charge of the Space Station. Flint suggests that the Joes harness the power of Mother Nature by rigging sails onto the aircraft carrier and the carrier floats home.

Shipwreck and Satin go their separate ways and as Shipwreck chases her down and asks her to help them fight Cobra while she drives away, she tells him that Cobra framed her father and he never really recovered. She hopes they will meet again, then speeds up and leaves Shipwreck while singing "The Cobra Who Got Away." Snake Eyes and the Joe animals catch up with Shipwreck and Snake Eyes reminds him about the laser disc.

At Cobra Temple, Cobra Commander debates with himself as to how he should present his ultimatum to the world. Should he start with his back to the camera and turn to the camera or would a close-up create the definitive dramatic moment for him, he wonders. The Crimson Guard Commanders enter the room and tell him that they now control Space Station Delta and the pyramid of darkness, and if Cobra Commander cooperates fully, then the twins will not remove him completely.

Alpine, Bazooka and Quick Kick climb off Major Bludd's HISS before it travels through a waterfall and enters Cobra Temple then steal a Cobra Transport Plane. However, several Cobra agents are onboard and attack the Joes after they are in the air. Alpine and Bazooka defeat the enemies but Bazooka, who is still suffering from an injured leg, is pushed back into the control panel and causes the plane to dive toward the ground.